MSTP Student First Author Papers

For a more complete list of individual publications visit each of our student pages.

2018

Angelos MG, Abrahante JE, Blum RH, Kaufman DS. Single cell resolution of human hemato-endothelial cells defines transcriptional signatures of hemogenic endothelium. Stem Cells. Stem Cells. 2018 Feb;36(2):206-217.

Cheng AZ, Yockteng-Melgar J, Jarvis MC, Malik-Soni N, Borozan I, Carpenter MA, McCann JL, Ebrahimi D, Shaban NM, Marcon E, Greenblatt J, Brown WL, Frappier L, Harris RS. Epstein-Barr virus BORF2 inhibits cellular APOBEC3B to preserve viral genome integrity. Nat Microbiol. 2018 Nov 12. [Epub ahead of print]

Csizmar CM, Petersburg JR, Wagner CR. Programming Cell-Cell Interactions through Non-genetic Membrane Engineering. Cell Chem Biol. 2018 Aug 16;25(8):931-940.

Csizmar CM, Petersburg JR, Hendricks A, Stern LA, Hackel BJ, Wagner CR. Engineering Reversible Cell-Cell Interactions with Lipid Anchored Prosthetic Receptors. Bioconjug Chem. 2018 Apr 18;29(4):1291-1301.

Donaldson MT, Polusny MA, MacLehose RF, Goldsmith ES, Hagel Campbell EM, Miron LR, Thuras PD, Krebs EE. Patterns of conventional and complementary non-pharmacological health practice use by US military veterans: a cross-sectional latent class analysis. BMC Complement Altern Med. 2018 Sep 5;18(1):246. PMCID: PMC6125945

Meier LA, Auger JL, Engelson BJ, Cowan HM, Breed ER, Gonzalez-Torres MI, Boyer JD, Verma M, Marath A, Binstadt BA. CD301b/MGL2+ Mononuclear Phagocytes Orchestrate Autoimmune Cardiac Valve Inflammation and Fibrosis. Circulation. 2018 Jun 5;137(23):2478-2493.

Meier LA, Binstadt BA. The Contribution of Autoantibodies to Inflammatory Cardiovascular Pathology. Front Immunol. 2018 Apr 27;9:911. Review. PMCID: PMC5934424

Pérez Ortiz JM, Orr HT. Spinocerebellar Ataxia Type 1: Molecular Mechanisms of Neurodegeneration and Preclinical Studies. Adv Exp Med Biol. 2018;1049:135-145.

Sweis BM, Thomas MJ, Redish AD. Beyond simple tests of value: measuring addiction as a heterogeneous disease of computation-specific valuation processes. Learn Mem. 2018 Aug 16;25(9):501-512.

Sweis BM, Abram SV, Schmidt BJ, Seeland KD, MacDonald AW 3rd, Thomas MJ, Redish AD. Sensitivity to "sunk costs" in mice, rats, and humans. Science. 2018 Jul 13;361(6398):178-181. doi: 10.1126/science.aar8644.

Sweis BM, Redish AD, Thomas MJ. Prolonged abstinence from cocaine or morphine disrupts separable valuations during decision conflict. Nat Commun. 2018 Jun 28;9(1):2521. PMCID: PMC6023899

Sweis BM, Thomas MJ, Redish AD. Mice learn to avoid regret. PLoS Biol. 2018 Jun 21;16(6):e2005853. PMCID: PMC6013153

Sweis BM, Larson EB, Redish AD, Thomas MJ. Altering gain of the infralimbic-to-accumbens shell circuit alters economically dissociable decision-making algorithms. Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):E6347-E6355.

Wheelwright M, Win Z, Mikkila JL, Amen KY, Alford PW, Metzger JM. Investigation of human iPSC-derived cardiac myocyte functional maturation by single cell traction force microscopy. PLoS One. 2018 Apr 4;13(4):e0194909.

Zick JL, Blackman RK, Crowe DA, Amirikian B, DeNicola AL, Netoff TI, Chafee MV. Blocking NMDAR Disrupts Spike Timing and Decouples Monkey Prefrontal Circuits: Implications for Activity-Dependent Disconnection in Schizophrenia. Neuron. 2018 Jun 27;98(6):1243-1255.e5. PMCID: PMC6085178

2017

Angelos MG, Abrahante JE, Blum RH, Kaufman DS. Single cell resolution of human hemato-endothelial cells defines transcriptional signatures of hemogenic endothelium. Stem Cells. Stem Cells. 2018 Feb;36(2):206-217.

Angelos MG, Ruh PN, Webber BR, Blum RH, Ryan CD, Bendzick L, Shim S, Yingst AM, Tufa DM, Verneris MR, and Kaufman DS. Aryl hydrocarbon receptor antagonism promotes early hemato-lymphoid development from human pluripotent stem cells. Blood. 2017 Jun 29;129(26):3428-3439.

Breed ER, Lee ST, Hogquist KA. Directing T cell fate: How thymic antigen presenting cells coordinate thymocyte selection. Semin Cell Dev Biol. 2017 Aug 9. pii: S1084-9521(16)30452-9. [Epub ahead of print] Review.

Cabrera-Perez J, Badovinac VP, Griffith TS. Enteric immunity, the gut microbiome, and sepsis: Rethinking the germ theory of disease. Exp Biol Med (Maywood). 2017 Jan;242(2):127-139. PMCID: PMC5167116

Kashem SW, Haniffa M, Kaplan DH. Antigen-Presenting Cells in the Skin. Annu Rev Immunol. 2017 Apr 26;35:469-499.

Verma M, Fitzpatrick K, McLoon LK. Extraocular Muscle Repair and Regeneration. Curr Ophthalmol Rep. 2017 Sep;5(3):207-215. doi: 10.1007/s40135-017-0141-4.

2016

Cabrera-Perez J, Babcock JC, Dileepan T, Murphy KA, Kucaba TA, Badovinac VP, Griffith TS. Gut Microbial Membership Modulates CD4 T Cell Reconstitution and Function after Sepsis. J Immunol. 2016 Sep 1;197(5):1692-8. PMCID: PMC4992581

Csizmar CM, Kim DH, Sachs Z. The role of the proteasome in AML. Blood Cancer J. 2016 Dec 2;6(12):e503. Review. PMCID: PMC5223148

Kashem SW, Kaplan DH. Skin Immunity to Candida albicans. Trends Immunol. 2016 Jul;37(7):440-50. Review. PMCID: PMC4931795

Lane MD, Seelig B. Highly efficient recombinant production and purification of streptococcal cysteine protease streptopain with increased enzymatic activity. Protein Expr Purif. 2016 May;121:66-72. PMCID: PMC4803605

McDonald-Hyman C, Flynn R, Panoskaltsis-Mortari A, Peterson N, MacDonald KP, Hill GR, Luznik L, Serody JS, Murphy WJ, Maillard I, Munn DH, Turka LA, Koreth J, Cutler CS, Soiffer RJ, Antin JH, Ritz J, Blazar BR. Therapeutic regulatory T-cell adoptive transfer ameliorates established murine chronic GVHD in a CXCR5 dependent manner. Blood. 2016 Aug 18;128(7):1013-7. PMCID: PMC4990850

Marko TA, Shamsan GA, Edwards EN, Hazelton PE, Rathe SK, Cornax I, Overn PR, Varshney J, Diessner BJ, Moriarity BS, O'Sullivan MG, Odde DJ, Largaespada DA. Slit-Robo GTPase-Activating Protein 2 as a metastasis suppressor in osteosarcoma. Sci Rep. 2016 Dec 14;6:39059. PMCID: PMC5155223

Marko TA, Diessner BJ, Spector LG. Prevalence of Metastasis at Diagnosis of Osteosarcoma: An International Comparison. Pediatr Blood Cancer. 2016 Jun;63(6):1006-11. PMCID: PMC4833631

Srienc AI, Biesecker KR, Shimoda AM, Kur J, Newman EA. Ischemia-induced spreading depolarization in the retina. J Cereb Blood Flow Metab. 2016 Sep;36(9):1579-91.

Sweis BM, Bachour SP, Brekke JA, Gewirtz JC, Sadeghi-Bazargani H, Hevesi M, Divani AA. A modified beam-walking apparatus for assessment of anxiety in a rodent model of blast traumatic brain injury. Behav Brain Res. 2016 Jan 1;296:149-56.

Verma M, Murkonda BS, Asakura Y, Asakura A. Skeletal Muscle Tissue Clearing for LacZ and Fluorescent Reporters, and Immunofluorescence Staining. Methods Mol Biol. 2016;1460:129-40. PMCID: PMC5108297

Weingarden AR, Dosa PI, DeWinter E, Steer CJ, Shaughnessy MK, Johnson JR, Khoruts A, Sadowsky MJ. Changes in Colonic Bile Acid Composition following Fecal Microbiota Transplantation Are Sufficient to Control Clostridium difficile Germination and Growth. PLoS One. 2016 Jan 20;11(1):e0147210. PMCID: PMC4720481

Weingarden AR, Chen C, Zhang N, Graiziger CT, Dosa PI, Steer CJ, Shaughnessy MK, Johnson JR, Sadowsky MJ, Khoruts A. Ursodeoxycholic Acid Inhibits Clostridium difficile Spore Germination and Vegetative Growth, and Prevents the Recurrence of Ileal Pouchitis Associated With the Infection. J Clin Gastroenterol. 2016 Sep;50(8):624-30.

Wijeyesinghe S, Masopust D. Resident memory T cells are a Notch above the rest. Nat Immunol. 2016 Nov 16;17(12):1337-1338.

Yellamilli A, van Berlo JH. The Role of Cardiac Side Population Cells in Cardiac Regeneration. Front Cell Dev Biol. 2016 Sep 13;4:102. Review. PMCID: PMC5020051

2015

Angelos MG, Kaufman DS. Pluripotent stem cell applications for regenerative medicine. Curr Opin Organ Transplant. 2015 Dec;20(6):663-70. PMCID: PMC4635470

Breed ER, Binstadt BA. Autoimmune valvular carditis. Curr Allergy Asthma Rep. 2015 Jan;15(1):491. Review. PMCID: PMC4440872

Cabrera-Perez J, Condotta SA, James BR, Kashem SW, Brincks EL, Rai D, Kucaba TA, Badovinac VP, Griffith TS. Alterations in antigen-specific naive CD4 T cell precursors after sepsis impairs their responsiveness to pathogen challenge. J Immunol. 2015 Feb 15;194(4):1609-20. PMCID: PMC4412277

Cramer SW
, Popa LS, Carter RE, Chen G, Ebner TJ. Abnormal excitability and episodic low-frequency oscillations in the cerebral cortex of the tottering mouse. J Neurosci. 2015 Apr 8;35(14):5664-79. PMCID: PMC4388925

Hewitt AL
, Popa LS, Ebner TJ. Changes in Purkinje Cell Simple Spike Encoding of Reach Kinematics during Adaption to a Mechanical Perturbation. J Neurosci. 2015 Jan 21;35(3):1106-24. PMCID: PMC4300320

Kashem SW, Riedl MS, Yao C, Honda CN, Vulchanova L, Kaplan DH. Nociceptive Sensory Fibers Drive Interleukin-23 Production from CD301b+ Dermal Dendritic Cells and Drive Protective Cutaneous Immunity. Immunity. 2015 Sep 15;43(3):515-26.

Kashem SW, Igyártó BZ, Gerami-Nejad M, Kumamoto Y, Mohammed J, Jarrett E, Drummond RA, Zurawski SM, Zurawski G, Berman J, Iwasaki A, Brown GD, Kaplan DH. Candida albicans Morphology and Dendritic Cell Subsets Determine T Helper Cell Differentiation. Immunity. 2015 Feb 17;42(2):356-66. PMCID: PMC4343045

Nanton MR
, Lee SJ, Atif SM, Nuccio SP, Taylor JJ, Bäumler AJ, Way SS, McSorley SJ. Direct visualization of endogenous Salmonella-specific B cells reveals a marked delay in clonal expansion and germinal center development. Eur J Immunol. 2015 Feb;45(2):428-41. 

Nelson RW
, Rajpal MN, Jenkins MK. The Neonatal CD4+ T Cell Response to a Single Epitope Varies in Genetically Identical Mice. J Immunol. 2015 Sep 1;195(5):2115-21.

Nelson RW
, Beisang D, Tubo NJ, Dileepan T, Wiesner DL, Nielsen K, Wüthrich M, Klein BS, Kotov DI, Spanier JA, Fife BT, Moon JJ, Jenkins MK. T Cell Receptor Cross-Reactivity between Similar Foreign and Self Peptides Influences Naive Cell Population Size and Autoimmunity. Immunity. 2015 Jan 20;42(1):95-107. PMCID: PMC4355167

Sweis BM
, Bachour SP, Brekke JA, Gewirtz JC, Sadeghi-Bazargani H, Hevesi M, Divani AA. A modified beam-walking apparatus for assessment of anxiety in a rodent model of blast traumatic brain injury. Behav Brain Res. 2015 Sep 11;296:149-156.

2014

Cabrera-Perez J, Condotta SA, Badovinac VP, Griffith TS. Impact of sepsis on CD4 T cell immunity. J Leukoc Biol. 2014 Nov;96(5):767-77. Review. PMCID: PMC4197564

Knorr DA
, Bachanova V, Verneris MR, Miller JS. Clinical utility of natural killer cells in cancer therapy and transplantation. Semin Immunol. 2014 Apr;26(2):161-72. PMCID: PMC3984606

Kuroki MT, Fink GD, Osborn JW. Comparison of arterial pressure and plasma AngII responses to three methods of subcutaneous AngII administration. Am J Physiol Heart Circ Physiol. 2014 307(5):H670-9. DOI: 10.1152/ajpheart.00922.2013. PMCID: PMC4187401

Lane MD, Seelig B. Advances in the directed evolution of proteins. Curr Opin Chem Biol. 2014 Oct;22:129-36. Review. PMCID: PMC4253873

Mahmud SA, Manlove LS, Schmitz HM, Xing Y, Wang Y, Owen DL, Schenkel JM, Boomer JS, Green JM, Yagita H, Chi H, Hogquist KA, Farrar MA. Costimulation via the tumor-necrosis factor receptor superfamily couples TCR signal strength to the thymic differentiation of regulatory T cells. Nat Immunol. 2014 May;15(5):473-81. PMCID: PMC4000541

San Miguel-Ruiz JE, Letourneau PC. The role of arp2/3 in growth cone actin dynamics and guidance is substrate dependent. J Neurosci. 2014 Apr;34(7):5895-908. PMCID: PMC3996216

Schenkel JM, Masopust D. Tissue-resident memory T cells. Immunity. 2014 Dec 18;41(6):886-97. PMCID: PMC4276131

Schenkel JM, Fraser KA, Beura LK, Pauken KE, Vezys V, Masopust D. T cell memory. Resident memory CD8 T cells trigger protective innate and adaptive immune responses. Science. 2014 Oct 3;346(6205):98-101. PMCID: PMC4449618

Schenkel JM, Masopust D. Identification of a resident T-cell memory core transcriptional signature. Immunol Cell Biol. 2014 Jan;92(1):8-9.

Schenkel JM*, Fraser KA, Masopust D. Cutting edge: resident memory CD8 T cells occupy frontline niches in secondary lymphoid organs. J Immunol. 2014 Apr 1;192(7):2961-4. PMCID: PMC3965619 *co-first author

Suszynski TM, Avgoustiniatos ES, Papas KK. Intraportal Islet Oxygenation. J Diabetes Sci Technol. 2014 Mar 6;8(3):575-580. Review.

Suszynski TM, Sieber DA, Cunningham BL, Van Beek AL. Implications of oxygenation in fat grafting. Plast Reconstr Surg. 2014 May;133(5):731e-733e.

Suszynski TM, Wilhelm JJ, Radosevich DM, Balamurugan AN, Sutherland DE, Beilman GJ, Dunn TB, Chinnakotla S, Pruett TL, Vickers SM, Hering BJ, Papas KK, Bellin MD. Islet Size Index as a Predictor of Outcomes in Clinical Islet Autotransplantation. Transplantation. 2014 June 27;97(12):1286-91.

Warren SG, Yacoub E, Ghose GM. Featural and temporal attention selectively enhance task-appropriate representations in human primary visual cortex. Nat Commun. 2014 Dec 12;5:5643. PMCID: PMC4449618

Weingarden AR*, Chen C, Bobr A, Yao D, Lu Y, Nelson VM, Sadowsky MJ, Khoruts A. Microbiota Transplantation Restores Normal Fecal Bile Acid Composition in Recurrent Clostridium difficile Infection. Am J Physiol Gastrointest Liver Physiol. 2014; 306:G310-G319. PMCID: PMC3920123 *co-first author


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